CDS

Accession Number TCMCG051C43223
gbkey CDS
Protein Id XP_024443599.1
Location join(2606677..2606799,2606894..2606994,2607180..2607259,2607432..2607922,2608089..2608199,2608629..2608766,2608893..2608940,2609084..2609164,2609378..2609537,2609830..2609951)
Gene LOC7458951
GeneID 7458951
Organism Populus trichocarpa

Protein

Length 484aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024587831.1
Definition DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA-(Apurinic or apyrimidinic site) lyase
KEGG_TC -
KEGG_Module M00296        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K01142        [VIEW IN KEGG]
ko:K10771        [VIEW IN KEGG]
EC 3.1.11.2        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004528        [VIEW IN EMBL-EBI]
GO:0004529        [VIEW IN EMBL-EBI]
GO:0004536        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008081        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008296        [VIEW IN EMBL-EBI]
GO:0008309        [VIEW IN EMBL-EBI]
GO:0008311        [VIEW IN EMBL-EBI]
GO:0008408        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016311        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016791        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016895        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042578        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGTTCTAAACGAGGTGTCTCGAGTTCAACCAAATCTGCTGCTGCTTCAATTGTTGATGACAAGAAAGATAGTAAACTTAAGGGGATGAGTGGTGATTGTAGTGAGAAAGTTTTAATCGAGGAAAGTTGCTGGAAAGTCCAGTCAGTTGAATTTCAAAGTATCAAGGATGATCCAGGAAAAATAGAAGCGATGACAGTTCAGGAACTTAGAGCAACATTGAGGAAATTTGGAGTCCCTGCCAAAGGTCGTAAAGGTGACCTTGTATTTGCTTTAAAGCATTTCATGGGTAAGCAGATAGATGGTGAAAGCTCTCAGGAATTAGAAGAGCGTGTTTCCTTTAATTCTCGGGAAAATATTTCACTGCAAAAGAATACTAAACGTACATCTGATGAGAGCTGCGTTGTAAGCATTAACACTGTTTCAGAGGTTTCTGGGTTTAAACAGAGCAAGAGAAGGATGAAACAATCCCCTGTTGAGGATGAAATTGTCAAAGTTGGTACTGAAATAGTCACTACAAAGAGGAAGCTTTCAATTAAAACCGATGATCTTGTTACTTTGCCTCAAGCTGAACCCTGGACGGTTCTTTCACATAAGAAGCCACAGAAAGGGTGGATTCCGTATAACCCCAGAACCATGAGGCCTGCACCTCTCACTGATGGAAACTCGGTGAAGCTAATGTCTTGGAATGTCAATGGGTTAAGAGCATTATTGAAGTTTGAGGGATTCTCTGCCCTTGAACTTGCCCAAAGGGAAAACTTTGATGTGTTGTGCTTGCAAGAGACCAAACTGCAGGAGAAGGATGTTGATTCCATCAAACAATGTCTGATAGATGGTTATGAGAATAGCTTCTGGACATGTAGCAATGCTAAACTTGGTTATTCTGGGACTGCAATTGTCTCTCGGATAAAGCCCCTTTCTGTCTGCTATGGTCTAGGCATCCCAGACCATGATAGTGAGGGACGTGTTGTGACAGCAGAGTTTGATTCATTTTATTTAGTAAATACTTATGTTCCTAACTCTGGAGATGGCTTGAAAAGACTGTCGTACAGGATTACACAATGGGATCCATCTCTTAGCAATTACATGAAAGAGCTTGAAAAGTCAAAGCCTGTCATTTTGACTGGTGATCTGAATTGTGCTCACCAGGAGATAGATATTTTCAATCCCGCAGGAAATAAAAGAAGCGCTGGGTTTACAGAAGAAGAAAGGCAGTCATTTGGGTCAAACTTTTTATCGAAGGGACTTGTGGATACCTTCAGAAAACAGCACCCTAATGTTGTTGGGTATACCTACTGGGGTTATCGACATGGTGGACGGAAAACTAACAAAGGATGGCGGCTTGACTACTTTCTCGTGTCGGAATCCATAGCAGACAAAGTTCATGACTCCTACATTGTCCCTGATGTTAATGGGAGTGATCACTGTCCTATTGGCCTTGTTCTCAAGGTTTAG
Protein:  
MSSKRGVSSSTKSAAASIVDDKKDSKLKGMSGDCSEKVLIEESCWKVQSVEFQSIKDDPGKIEAMTVQELRATLRKFGVPAKGRKGDLVFALKHFMGKQIDGESSQELEERVSFNSRENISLQKNTKRTSDESCVVSINTVSEVSGFKQSKRRMKQSPVEDEIVKVGTEIVTTKRKLSIKTDDLVTLPQAEPWTVLSHKKPQKGWIPYNPRTMRPAPLTDGNSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQEKDVDSIKQCLIDGYENSFWTCSNAKLGYSGTAIVSRIKPLSVCYGLGIPDHDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSYRITQWDPSLSNYMKELEKSKPVILTGDLNCAHQEIDIFNPAGNKRSAGFTEEERQSFGSNFLSKGLVDTFRKQHPNVVGYTYWGYRHGGRKTNKGWRLDYFLVSESIADKVHDSYIVPDVNGSDHCPIGLVLKV